Title :
BindSDb: A binding-information spatial database
Author :
Roqueiro, Damian ; Frasor, Jonna ; Dai, Yang
Author_Institution :
Dept. of Bioeng., Univ. of Illinois at Chicago, Chicago, IL, USA
Abstract :
We have developed a database that stores experimental binding data and predicted transcription factor binding sites. All true and putative binding sites are stored in conjunction with the latest assembly of the human genome in a spatial database that answers user-input queries about topological relationships between the genes, binding sites and transcription factors.
Keywords :
bioinformatics; genetics; genomics; topology; visual databases; bindSDb; binding data; binding-information spatial database; genes; human genome; putative binding sites; topological relationships; transcription factor binding sites; user-input queries; binding data; genomic data; prediction of transcription factor binding sites; spatial database; topological queries;
Conference_Titel :
Bioinformatics and Biomedicine Workshops (BIBMW), 2010 IEEE International Conference on
Conference_Location :
Hong, Kong
Print_ISBN :
978-1-4244-8303-7
Electronic_ISBN :
978-1-4244-8304-4
DOI :
10.1109/BIBMW.2010.5703864
