DocumentCode :
2388318
Title :
Dynamics in the Folding of Long DNA Chain under Strong Flow
Author :
Saito, Takuya ; Sakaue, Takahiro ; Kaneko, Daiji ; Washizu, Masao ; Oana, Hidehiro
Author_Institution :
Dept. of Mech. Eng., Univ. of Tokyo, Tokyo
fYear :
2008
fDate :
6-9 Nov. 2008
Firstpage :
118
Lastpage :
123
Abstract :
This paper presents the study about the dynamics in the folding of long DNA under strong flow. Direct observation of the folding process of the tethered DNA molecule induced by adding a condensing agent is demonstrated using a microfluidic device, and this theoretical interpretation of the process is provided. From the direct observation, it is found that the folding dynamics typically exhibits characteristic three stages: (i) initial rapid compaction, (ii) slowing-down, (iii) sudden speed-up. Such a notable feature pin-points a nonequilibrium flow effect and can be interpreted by a simple theory, which takes account of the nonuniformity of the tethered chain stretched by flow.
Keywords :
DNA; biocomputing; genomics; microfluidics; molecular biophysics; DNA chain under strong flow; folding process; genomic DNA; microfluidic device; tethered DNA molecule; Bioinformatics; Biomedical engineering; Chemistry; Coils; Compaction; DNA; Genomics; Hydrodynamics; Mechanical engineering; Microfluidics;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Micro-NanoMechatronics and Human Science, 2008. MHS 2008. International Symposium on
Conference_Location :
Nagoya
Print_ISBN :
978-1-4244-2918-9
Electronic_ISBN :
978-1-4244-2919-6
Type :
conf
DOI :
10.1109/MHS.2008.4752434
Filename :
4752434
Link To Document :
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