Title :
A modified bat algorithm to predict Protein-Protein Interaction network
Author :
Chowdhury, Abishi ; Rakshit, Pratyusha ; Konar, Amit ; Nagar, Atulya K.
Author_Institution :
Dept. of Electron. & Telecommun. Eng., Jadavpur Univ., Kolkata, India
Abstract :
This paper provides a novel approach to predict the Protein-Protein Interaction (PPI) network using a modified version of the Bat Algorithm. The attractive trait of the proposed approach is that it attempts to analyze the impact of physicochemical properties, structural features and evolutionary relationship of proteins, to predict the PPI network. Computer simulations reveal that our proposed method effectively predicts the PPI of Saccharomyces Cerevisiae with a sensitivity of (0.85) and specificity of (0.87) and outperforms other state-of-art methodologies.
Keywords :
biochemistry; biology computing; microorganisms; molecular biophysics; molecular configurations; proteins; PPI network; Saccharomyces cerevisiae; evolutionary relationship; modified bat algorithm; physicochemical properties; protein-protein interaction network; structural features; Accuracy; Barium; Classification algorithms; Phylogeny; Prediction algorithms; Proteins; Sensitivity; accessible solvent area; bat algorithm; domains; phylogenetic profiles; protein-protein interaction networks;
Conference_Titel :
Evolutionary Computation (CEC), 2014 IEEE Congress on
Conference_Location :
Beijing
Print_ISBN :
978-1-4799-6626-4
DOI :
10.1109/CEC.2014.6900518