• DocumentCode
    2394074
  • Title

    Metadata and annotations for multi-scale electrophysiological data

  • Author

    Bower, Mark R. ; Stead, Matt ; Brinkmann, Benjamin H. ; Dufendach, Kevin ; Worrell, Gregory A.

  • Author_Institution
    Mayo Syst. Electrophysiology Lab., Rochester, MN, USA
  • fYear
    2009
  • fDate
    3-6 Sept. 2009
  • Firstpage
    2811
  • Lastpage
    2814
  • Abstract
    The increasing use of high-frequency (kHz), long-duration (days) intracranial monitoring from multiple electrodes during pre-surgical evaluation for epilepsy produces large amounts of data that are challenging to store and maintain. Descriptive metadata and clinical annotations of these large data sets also pose challenges to simple, often manual, methods of data analysis. The problems of reliable communication of metadata and annotations between programs, the maintenance of the meanings within that information over long time periods, and the flexibility to re-sort data for analysis place differing demands on data structures and algorithms. Solutions to these individual problem domains (communication, storage and analysis) can be configured to provide easy translation and clarity across the domains. The multiscale annotation format (MAF) provides an integrated metadata and annotation environment that maximizes code reuse, minimizes error probability and encourages future changes by reducing the tendency to over-fit information technology solutions to current problems. An example of a graphical utility for generating and evaluating metadata and annotations for ldquobig datardquo files is presented.
  • Keywords
    bioelectric phenomena; biology computing; data analysis; error statistics; meta data; clinical annotations; code reuse maximization; data algorithms; data analysis; data communication; data storage; data structures; epilepsy; error probability minimization; high-frequency long-duration intracranial monitoring; metadata; multiple electrodes; multiscale annotation format; multiscale electrophysiological data; over-fit information technology; pre-surgical evaluation; Algorithms; Automatic Data Processing; Automation; Biomedical Engineering; Data Compression; Data Interpretation, Statistical; Electroencephalography; Electrophysiology; Humans; Programming Languages; Signal Processing, Computer-Assisted; Software;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual International Conference of the IEEE
  • Conference_Location
    Minneapolis, MN
  • ISSN
    1557-170X
  • Print_ISBN
    978-1-4244-3296-7
  • Electronic_ISBN
    1557-170X
  • Type

    conf

  • DOI
    10.1109/IEMBS.2009.5333570
  • Filename
    5333570