Title :
Microarray image segmentation using chan-vese active contour model and level set method
Author :
Mendhurwar, Kaustubha A. ; Kakumani, Rajasekhar ; Devabhaktuni, Vijay
Author_Institution :
Fac. of Eng. & Comput. Sci., Concordia Univ., Montreal, QC, Canada
Abstract :
Microarray technology is considered to be one of the major breakthroughs in bioinformatics for profiling gene-expressions of thousands of genes, simultaneously. Analysis of a microarray image plays an important role in the accurate depiction of gene-expression. Segmentation, the process of separating the foreground from the background, of a microarray image, is one of the key issues in microarray image analysis. Level sets have tremendous potential in the segmentation of images. In this paper, a new approach for segmentation of the microarray images is proposed. In this work, Chan-Vese approximation of the Mumford-Shah model and the level set method are employed for image segmentation. Illustrative examples of the proposed method are presented highlighting its effectiveness.
Keywords :
genetics; image segmentation; medical image processing; Chan-Vese active contour model; Chan-Vese approximation; Mumford-Shah model; gene expression; level set method; microarray image segmentation; Chan-Vese approximation model; level sets; microarray image; segmentation; Algorithms; Cluster Analysis; Computational Biology; DNA, Complementary; Humans; Image Interpretation, Computer-Assisted; Image Processing, Computer-Assisted; Models, Statistical; Oligonucleotide Array Sequence Analysis; Pattern Recognition, Automated; RNA, Messenger;
Conference_Titel :
Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual International Conference of the IEEE
Conference_Location :
Minneapolis, MN
Print_ISBN :
978-1-4244-3296-7
Electronic_ISBN :
1557-170X
DOI :
10.1109/IEMBS.2009.5333761