• DocumentCode
    2413417
  • Title

    Sparse nonnegative matrix factorization with the elastic net

  • Author

    Liu, Weixiang ; Zheng, Songfeng ; Jia, Sen ; Shen, Linlin ; Fu, Xianghua

  • Author_Institution
    Dept. of Biomed. Eng., Shenzhen Univ., Shenzhen, China
  • fYear
    2010
  • fDate
    18-21 Dec. 2010
  • Firstpage
    265
  • Lastpage
    268
  • Abstract
    Nonnegative matrix factorization is used extensively for feature extraction and clustering analysis. Recently many sparsity/sparseness constraints, such as L1 penalty, are introduced for sparse nonnegative matrix factorization. Inspired by sparsity measures from linear regression model, this paper proposes to integrate nonnegative matrix factorization with another sparsity constraint, the elastic net. The experimental results of clustering analysis on three gene expression datasets demonstrate the effectiveness of the proposed method.
  • Keywords
    bioinformatics; feature extraction; genetics; pattern clustering; regression analysis; sparse matrices; clustering analysis; elastic net; feature extraction; gene expression; linear regression model; sparse nonnegative matrix factorization; Accuracy; Bioinformatics; Cancer; Data analysis; Encoding; Gene expression; Sparse matrices; Nonnegative matrix factorization; clustering analysis; gene expression data; sparsity penalty;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine (BIBM), 2010 IEEE International Conference on
  • Conference_Location
    Hong Kong
  • Print_ISBN
    978-1-4244-8306-8
  • Electronic_ISBN
    978-1-4244-8307-5
  • Type

    conf

  • DOI
    10.1109/BIBM.2010.5706574
  • Filename
    5706574