• DocumentCode
    2450977
  • Title

    Measuring properties of molecular surfaces using ray casting

  • Author

    Phillips, Mike ; Georgiev, Iliyan ; Dehof, Anna Katharina ; Nickels, Stefan ; Marsalek, Lukas ; Lenhof, Hans-Peter ; Hildebrandt, Andreas ; Slusallek, Philipp

  • Author_Institution
    DFKI Saarbrucken, Saarbrucken, Germany
  • fYear
    2010
  • fDate
    19-23 April 2010
  • Firstpage
    1
  • Lastpage
    7
  • Abstract
    Molecular geometric properties, such as volume, exposed surface area, and occurrence of internal cavities, are important inputs to many applications in molecular modeling. In this work we describe a very general and highly efficient approach for the accurate computation of such properties, which is applicable to arbitrary molecular surface models. The technique relies on a high performance ray casting framework that can be easily adapted to the computation of further quantities of interest at interactive speed, even for huge models.
  • Keywords
    biology computing; molecular biophysics; ray tracing; internal cavities; molecular geometric properties; molecular modeling; molecular surface models; molecular surfaces; ray casting; Application software; Area measurement; Bioinformatics; Casting; Computer graphics; Molecular biophysics; Shape; Solid modeling; Solvents; Volume measurement; ray tracing; surface area; volume;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW), 2010 IEEE International Symposium on
  • Conference_Location
    Atlanta, GA
  • Print_ISBN
    978-1-4244-6533-0
  • Type

    conf

  • DOI
    10.1109/IPDPSW.2010.5470898
  • Filename
    5470898