Title :
Photoelectric DNA-Detection Platform with Assembled Magnetic Beads
Author :
Li, Fei ; Xu, Jin
Author_Institution :
Key Lab. of High Confidence Software Technol., Peking Univ., Beijing, China
Abstract :
In this work, we propose a DNA hybridization detection platform with assembled magnetic beads and integrated photodiodes on a silicon chip. DNA targets labeled magnetic beads generate an opaque area after hybridization, and the fabricated photodiode is utilized to turn ordinary light into electricity. Compared with the detected photocurrent before hybridization, the signal of DNA hybridization can be distinctly diagnosed by the light intensity changing. As far as we know, it is the first time to assemble magnetic beads with integrated photodiode on a silicon chip to detect DNA hybridization. The advantages of this detection platform are lower cost, higher precision and less time consuming. With this technique, we could successfully discriminate single base mismatched DNA from perfectly matched DNA sequence, which saves the time of amplifying hybridization signal. This detection platform also fits for DNA computing because magnetic property could easily eliminate unfeasible solutions of problem. The experimental result of a minimum vertex cover problem, which is solved by DNA computing on this platform, reveals the obvious benefits of this detection platform and its potential to be used to construct a fully automatic DNA computer with photoelectric readout.
Keywords :
DNA; biological techniques; biology computing; biosensors; lab-on-a-chip; molecular biophysics; photodiodes; DNA computing; DNA hybridization detection platform; DNA sequence; Si; assembled magnetic beads; automatic DNA computer; integrated photodiodes; magnetic property; minimum vertex cover problem; photoelectric DNA-detection platform; photoelectric readout; silicon chip; single base mismatched DNA; DNA; DNA computing; Light sources; Photoconductivity; Photodiodes; Probes; Silicon; DNA computing; DNA-detection; hybridization; magnetic beads; photodiode;
Conference_Titel :
Bioinformatics and Bioengineering (BIBE), 2011 IEEE 11th International Conference on
Conference_Location :
Taichung
Print_ISBN :
978-1-61284-975-1
DOI :
10.1109/BIBE.2011.44