Title :
A new support vector machine for microarray classification and adaptive gene selection
Author :
Li, Juntao ; Jia, Yingmin ; Du, Junping ; Yu, Fashan
Author_Institution :
Seventh Res. Div., Beihang Univ. (BUAA), Beijing, China
Abstract :
This paper presents a new support vector machine for simultaneous gene selection and microarray classification. By introducing the adaptive elastic net penalty which is a convex combination of weighted 1-norm penalty and weighted 2-norm penalty, the proposed support vector machine can encourage an adaptive grouping effect and reduce the shrinkage bias for the large coefficients. According to a reasonable correlation between the two regularization parameters, the optimal coefficient paths are shown to be piecewise linear and the corresponding solving algorithm is developed. Experiments are performed on leukaemia data that verify the research results.
Keywords :
biology computing; genetics; pattern classification; piecewise linear techniques; support vector machines; adaptive elastic net penalty; adaptive gene selection; microarray gene classification; optimal coefficient path; piecewise linear; support vector machine; weighted 1-norm penalty; weighted 2-norm penalty; Adaptive control; Cancer; Cardiac disease; Gene expression; Genomics; Input variables; Piecewise linear techniques; Programmable control; Support vector machine classification; Support vector machines; Gene selection; grouping effect; microarray classification; solution path; support vector machine (SVM);
Conference_Titel :
American Control Conference, 2009. ACC '09.
Conference_Location :
St. Louis, MO
Print_ISBN :
978-1-4244-4523-3
Electronic_ISBN :
0743-1619
DOI :
10.1109/ACC.2009.5160235