Title :
A comprehensive comparison of ML algorithms for gene expression data classification
Author :
De Souza, Bruno Feres ; de Carvalho, André C P L P ; Soares, Carlos
Author_Institution :
ICMC, Univ. of Sao Paulo, São Carlos, Brazil
Abstract :
Nowadays, microarray has become a fairly common tool for simultaneously inspecting the behavior of thousands of genes. Researchers have employed this technique to understand various biological phenomena. One straightforward use of such technology is identifying the class membership of the tissue samples based on their gene expression profiles. This task has been handled by a number of computational methods. In this paper, we provide a comprehensive evaluation of 7 commonly used algorithms over 65 publicly available gene expression datasets. The focus of the study was on comparing the performance of the algorithms in an efficient and sound manner, supporting the prospective users on how to proceed to choose the most adequate classification approach according to their investigation goals.
Keywords :
biology computing; data handling; learning (artificial intelligence); pattern classification; ML algorithms; biological phenomena; gene expression data classification; gene expression datasets; machine learning; Bioinformatics; Genomics; Radio frequency;
Conference_Titel :
Neural Networks (IJCNN), The 2010 International Joint Conference on
Conference_Location :
Barcelona
Print_ISBN :
978-1-4244-6916-1
DOI :
10.1109/IJCNN.2010.5596651