Title :
Parameter Estimation for Nonlinear Biological System Model Based on Global Sensitivity Analysis
Author_Institution :
Sch. of Inf. & Commun. Eng., North Univ. of China, Taiyuan, China
Abstract :
Mathematical models of cell signal transduction networks are normally highly nonlinear and complex, which consist of a large number of reaction species and kinetics parameters. An important problem of systems biology is to develop mathematical models of nonlinear biological systems, and to effectively estimate the unknown parameters. In this work, a novel algorithm to estimate parameters based on global sensitivity analysis is proposed, and extended Kalman filter is applied to estimate the unknown sensitive parameters of signaling transduction networks model. Taking an IkappaBalpha~-NF-kappaB signaling pathway model as an example, simulation analysis demonstrates that the algorithm can well estimate the unknown parameters under the disturbs of the noise, and it provides an efficient method for solving the parameters´ uncertainty effects of biological pathways.
Keywords :
Kalman filters; biochemistry; biology computing; cellular biophysics; filtering theory; reaction kinetics theory; cell signal transduction networks; extended Kalman filter; global sensitivity analysis; kinetics parameters; mathematical models; nonlinear biological system model; parameter estimation; reaction species; signaling pathway model; Algorithm design and analysis; Analytical models; Biological system modeling; Biological systems; Kinetic theory; Mathematical model; Parameter estimation; Sensitivity analysis; Signal analysis; Systems biology;
Conference_Titel :
Bioinformatics and Biomedical Engineering , 2009. ICBBE 2009. 3rd International Conference on
Conference_Location :
Beijing
Print_ISBN :
978-1-4244-2901-1
Electronic_ISBN :
978-1-4244-2902-8
DOI :
10.1109/ICBBE.2009.5163168