DocumentCode
2523717
Title
AUTOMATED MICROSCOPY SCREEN TO IDENTIFY COMPONENTS REQUIRED FOR MITOTIC CELL CYCLE PROGRESSION IN HUMAN CELLS
Author
Rines, Daniel R. ; Gomez, Mariana ; Zhou, Yingyao ; DeJesus, Paul ; Grob, Seanna ; Batalov, Serge ; Labow, Marc ; Huesken, Dieter ; Mickanin, Craig ; Hall, Jonathan ; Reinhardt, Mischa ; Natt, Francois ; Lange, Joerg ; Sharp, David J. ; Chanda, Sumit K. ;
Author_Institution
Genomics Inst. of Novartis Res. Found., San Diego, CA
fYear
2007
fDate
12-15 April 2007
Firstpage
1112
Lastpage
1115
Abstract
We designed an image-based screen using automated microscopy to discover genetic factors essential for mitotic progression. Using a human genome-wide RNAi library, we performed a loss-of-function screen looking for siRNAs that arrest cells in metaphase. Supervised clustering of the multiparametric morphological data with gene ontology (GO) annotations, protein families, tissue expression and protein-protein interactions functionally classified these genes into discrete mitotic processes involved in spindle assembly. We used this approach to rapidly identify important novel genes based on their association with known genes in the clusters. We present here the automated methods used to identify these components.
Keywords
biomedical optical imaging; cellular biophysics; genetics; medical image processing; molecular biophysics; optical microscopy; proteins; RNAi; automated microscopy screen; gene ontology; genetic factors; human cells; loss-of-function screen; mitotic cell cycle progression; protein-protein interactions; siRNA; supervised clustering; tissue expression; Bioinformatics; Biological cells; Clustering algorithms; Genomics; Humans; Image analysis; Libraries; Microscopy; Ontologies; Proteins;
fLanguage
English
Publisher
ieee
Conference_Titel
Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on
Conference_Location
Arlington, VA
Print_ISBN
1-4244-0672-2
Electronic_ISBN
1-4244-0672-2
Type
conf
DOI
10.1109/ISBI.2007.357051
Filename
4193485
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