Title :
Reducing gene regulatory networks by decomposition
Author :
Chen, Luonan ; Wang, Ruiqi ; Aihara, Kazuyuki
Author_Institution :
Osaka Sangyo Univ., Japan
Abstract :
This paper deals with the theoretical framework derived for gene regulatory networks with stochasticity. We exploit the fast-slow dynamics of biological systems to reduce the dimensionality, and take advantage of special interaction structure of fast-slow variables to simplify the mathematical model, which significantly reduce the complexity of gene networks. The numerical simulation also confirmed the effectiveness of our method, which can be applied to a large-scale quantitative simulation of cellular dynamics.
Keywords :
biochemistry; biology computing; cellular biophysics; genetics; numerical analysis; physiological models; stochastic processes; biological systems; cellular dynamics; decomposition; fast-slow dynamics; gene regulatory networks; interaction structure; mathematical model; numerical simulation; stochasticity; Biochemistry; Biological system modeling; Biological systems; Chemical analysis; Computer networks; Degradation; Equations; Mathematical model; Proteins; Splicing;
Conference_Titel :
Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE
Print_ISBN :
0-7695-2442-7
DOI :
10.1109/CSBW.2005.117