DocumentCode
2527324
Title
A generic algorithm to find all common intervals of two permutations
Author
Feng, Guiliang ; Shan, Yujiang
Author_Institution
Center of Adv. Comput. Study, Louisiana Univ., Lafayette, LA, USA
fYear
2005
fDate
8-11 Aug. 2005
Firstpage
85
Lastpage
86
Abstract
Let K he the set of {1,2,....,m}, [x, y] denote the set of [x,x+1,...,y], where 1≤x,y≤m. Given two permutations σA and σB of a set ℵ, A 2-tuple of intervals ([x1, y1], [x2, y2]) is called common intervals if σA([x1, y1])=([x2, y2]). In this paper, we propose a sufficient and necessary condition for a 2-tuple of intervals to be common intervals. Based on these conditions, we present a generic algorithm that finds all common intervals of these two permutations.
Keywords
biology computing; cellular biophysics; evolution (biological); genetic algorithms; genetics; iterative methods; molecular biophysics; common interval; comparative genomics; evolutional association; generic algorithm; iterative method; permutation; Bioinformatics; Computer science; Conferences; Genomics; Proteins; Upper bound;
fLanguage
English
Publisher
ieee
Conference_Titel
Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE
Print_ISBN
0-7695-2442-7
Type
conf
DOI
10.1109/CSBW.2005.9
Filename
1540551
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