• DocumentCode
    2527324
  • Title

    A generic algorithm to find all common intervals of two permutations

  • Author

    Feng, Guiliang ; Shan, Yujiang

  • Author_Institution
    Center of Adv. Comput. Study, Louisiana Univ., Lafayette, LA, USA
  • fYear
    2005
  • fDate
    8-11 Aug. 2005
  • Firstpage
    85
  • Lastpage
    86
  • Abstract
    Let K he the set of {1,2,....,m}, [x, y] denote the set of [x,x+1,...,y], where 1≤x,y≤m. Given two permutations σA and σB of a set ℵ, A 2-tuple of intervals ([x1, y1], [x2, y2]) is called common intervals if σA([x1, y1])=([x2, y2]). In this paper, we propose a sufficient and necessary condition for a 2-tuple of intervals to be common intervals. Based on these conditions, we present a generic algorithm that finds all common intervals of these two permutations.
  • Keywords
    biology computing; cellular biophysics; evolution (biological); genetic algorithms; genetics; iterative methods; molecular biophysics; common interval; comparative genomics; evolutional association; generic algorithm; iterative method; permutation; Bioinformatics; Computer science; Conferences; Genomics; Proteins; Upper bound;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computational Systems Bioinformatics Conference, 2005. Workshops and Poster Abstracts. IEEE
  • Print_ISBN
    0-7695-2442-7
  • Type

    conf

  • DOI
    10.1109/CSBW.2005.9
  • Filename
    1540551