• DocumentCode
    2568846
  • Title

    Relation between kinetic conversion rates and ANM mode frequencies

  • Author

    Özgur, Beytullah ; Gürsoy, Attila ; Keskin, Özlem

  • Author_Institution
    Grad. Sch. of Sci. & Eng., Koc Univ., Istanbul, Turkey
  • fYear
    2010
  • fDate
    20-22 April 2010
  • Firstpage
    88
  • Lastpage
    92
  • Abstract
    Elastic Network Models (ENMs) are informative, fast and largely used techniques for the elucidation of the intrinsic motions of the proteins. ENM normal modes resemble the conformational changes in the ligand-free states of the proteins. According to pre-existing equilibrium model the native state of the protein forms an ensemble of substates and ligand simply selects and shifts the population dynamics of the ensemble. In this study, we investigated the relation between normal mode frequencies and kinetic conversion rates of ensemble substates between each other.
  • Keywords
    molecular biophysics; molecular configurations; proteins; ANM mode frequency; ENM normal modes; anisotropic network model; elastic network models; ensemble population dynamics; kinetic conversion rate; protein conformational changes; protein ligand free states; protein motions; Biochemistry; Biological system modeling; Biological systems; Crystallization; Energy barrier; Fluctuations; Frequency conversion; Kinetic theory; Nuclear magnetic resonance; Protein engineering;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Health Informatics and Bioinformatics (HIBIT), 2010 5th International Symposium on
  • Conference_Location
    Antalya
  • Print_ISBN
    978-1-4244-5968-1
  • Type

    conf

  • DOI
    10.1109/HIBIT.2010.5478902
  • Filename
    5478902