DocumentCode
2570600
Title
Redi: A Simulator of Stochastic Biochemical Reaction-Diffusion Systems
Author
Lecca, Paola ; Dematté, Lorenzo ; Ihekwaba, Adaoha E C ; Priami, Corrado
Author_Institution
Centre for Comput. & Syst. Biol., Univ. of Trento, Trento, Italy
fYear
2010
fDate
22-27 Aug. 2010
Firstpage
82
Lastpage
87
Abstract
We present a new model of anisotropic reaction-diffusion systems and the algorithmic framework of the software Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo.
Keywords
biochemistry; biology computing; proteins; reaction-diffusion systems; Drosophila Melanogaster embryo; Redi; anisotropic reaction diffusion system; bicoid protein gradient; reaction diffusion simulator; stochastic biochemical reaction diffusion system; Biological system modeling; Chemicals; Computational modeling; Force; Heuristic algorithms; Proteins; Stochastic processes; CoSBiLab Redi; Drosophila embryo; bicoid gradient; reaction diffusion systems; stochastic simulation;
fLanguage
English
Publisher
ieee
Conference_Titel
Advances in System Simulation (SIMUL), 2010 Second International Conference on
Conference_Location
Nice
Print_ISBN
978-1-4244-7783-8
Electronic_ISBN
978-0-7695-4142-6
Type
conf
DOI
10.1109/SIMUL.2010.14
Filename
5601894
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