DocumentCode
2580689
Title
Study on fast rough alignment for two-stage protein structure comparison algorithm
Author
Huang, Chien-Kang
Author_Institution
Dept. of Eng. Sci. & Ocean Eng., Nat. Taiwan Univ., Taipei, Taiwan
fYear
2005
fDate
15-16 Aug. 2005
Abstract
This paper presents a preliminary study on fast rough alignment for two-stage protein structure comparison (PSC) algorithm. In this paper, we proposed a new two-stage PSC algorithm. In the previous research, nongeometric protein information has been studied and applied in proposed PSC algorithm. The preliminary experiment result reveals that nongeometric information, especially biochemical information, is very useful in rough alignment stage of proposed two-stage PSC algorithm.
Keywords
biochemistry; biology computing; chemistry computing; computational geometry; proteins; biochemical information; fast rough alignment; nongeometric protein information; two-stage protein structure comparison; Amino acids; Bioinformatics; Clustering algorithms; Coils; Evolution (biology); Oceans; Protein engineering; Sequences;
fLanguage
English
Publisher
ieee
Conference_Titel
Emerging Information Technology Conference, 2005.
Print_ISBN
0-7803-9328-7
Type
conf
DOI
10.1109/EITC.2005.1544343
Filename
1544343
Link To Document