DocumentCode :
258119
Title :
De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp
Author :
Ghaffari, Noushin ; Arshad, Osama A. ; Hyundoo Jeong ; Thiltges, John ; Criscitiello, Michael F. ; Byung-Jun Yoon ; Datta, Aniruddha ; Johnson, Charles D.
Author_Institution :
AgriLife Genomics & Bioinf., Texas A&M AgriLife Res., College Station, TX, USA
fYear :
2014
fDate :
3-5 Dec. 2014
Firstpage :
1342
Lastpage :
1343
Abstract :
Transcriptome assembly techniques provide a valuable opportunity to learn more about non-model organisms. We present transcriptome assemblies for Pacific whiteleg shrimp (Litopenaeus vannamei), a species of great importance in global mariculture, that lacks solid transcriptome and genome references. We examine the new Pacific whiteleg transcriptome assemblies via multiple metrics, and compare the result with annotated similar species.
Keywords :
RNA; biological techniques; genomics; molecular biophysics; Litopenaeus vannamei; Pacific whiteleg shrimp; genome references; global mariculture; nonmodel organisms; solid transcriptome; transcriptome assembly technique; Assembly; Bioinformatics; Educational institutions; Genomics; Organisms; Pipelines;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Signal and Information Processing (GlobalSIP), 2014 IEEE Global Conference on
Conference_Location :
Atlanta, GA
Type :
conf
DOI :
10.1109/GlobalSIP.2014.7032342
Filename :
7032342
Link To Document :
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