DocumentCode :
260310
Title :
Essential Gene Identification for a Microarray Data of Yersinia Pestis
Author :
Lianfen Qian ; Wei Zhang ; Zhongwei Li
Author_Institution :
Dept. of Math. Sci., Florida Atlantic Univ., Boca Raton, FL, USA
fYear :
2014
fDate :
10-12 Nov. 2014
Firstpage :
185
Lastpage :
190
Abstract :
This paper is motivated by a DNA micro array data obtained from a genome-wide mutation library for the bacterium Yersinia Pestis. The purpose of this study is to identify essential genes for the bacterium Yersinia Pestis. The data set contains more than four thousands genes and each gene has different number of observations with unequal number of probe observations. We propose a feature selection method for the representing three probes and a new gene level adjusted multiple statistical test to handle the problem of unequal number of observations. The proposed method is compared with two other methods based on Behrens-Fisher method and Hotelling t-square method. Our results show that our proposed method is more suitable among the three for identifying essential genes using the DNA micro array data.
Keywords :
data analysis; genomics; lab-on-a-chip; microorganisms; statistical analysis; Behrens-Fisher method; DNA micro array data; Hotelling t-square method; Yersinia pestis; feature selection method; gene identification; genome-wide mutation library; microarray data; probe observation; statistical test; Bioinformatics; DNA; Educational institutions; Genomics; Libraries; Market research; Probes; Microarray; Yersinia pestis; essential genes; gene-level adjusted multiple t-test; genome-wide mutagenesis; number of probes;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics and Bioengineering (BIBE), 2014 IEEE International Conference on
Conference_Location :
Boca Raton, FL
Type :
conf
DOI :
10.1109/BIBE.2014.20
Filename :
7033579
Link To Document :
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