Title :
Identification and location of hot spots in proteins using the short-time discrete Fourier transform
Author :
Ramachandran, Parameswaran ; Antoniou, Andreas ; Vaidyanathan, P.P.
Author_Institution :
Dept. of Electr. & Comput. Eng., Victoria Univ., BC, Canada
Abstract :
A new approach for the identification and location of hot spots in proteins based on the short-time discrete Fourier transform (DFT) is proposed. In the new approach the short-time DFT of the protein numerical sequence is first computed and its columns are then multiplied by the DFT coefficients. By performing this step, the hot spot locations can be clearly identified by distinct peaks in the spectrum, thus achieving good localization in the amino acid domain.
Keywords :
biological techniques; biology computing; discrete Fourier transforms; pattern recognition; proteins; amino acid domain; hot spot locations; protein numerical sequence; short-time discrete Fourier transform; Amino acids; Character recognition; Digital signal processing; Discrete Fourier transforms; Protein engineering; Resonance; Shape; Signal analysis; Spectrogram; Stability;
Conference_Titel :
Signals, Systems and Computers, 2004. Conference Record of the Thirty-Eighth Asilomar Conference on
Print_ISBN :
0-7803-8622-1
DOI :
10.1109/ACSSC.2004.1399439