Title :
A microfluidic device for isolation of cell-targeting aptamers
Author :
Jing Zhu ; Olsen, Thomas ; Renjun Pei ; Stojanovic, Milica ; Qiao Lin
Author_Institution :
Dept. of Mech. Eng., Columbia Univ., New York, NY, USA
Abstract :
This paper presents a microfluidic device for affinity selection and amplification of cell membrane protein-binding strands from a randomized single-strand DNA (ssDNA) oligomer library, thereby isolating specific cell-targeting aptamers. The device consists of the selection and amplification microchambers situated on a temperature control chip. Affinity selection, integrated with cell culturing, of cell-binding ssDNA is performed in the selection chamber; the selected strands are then amplified by bead-based polymerase chain reaction (PCR) in the amplification chamber. Transfer between the selection and amplification microchambers using pressure-driven flow realizes multi-round aptamer isolation on a single chip. Experimental results demonstrate the feasibility of using this device to develop aptamers that specifically bind to target cells.
Keywords :
DNA; bioMEMS; biochemistry; biomembranes; cellular biophysics; enzymes; microfluidics; molecular biophysics; molecular configurations; affinity amplification; affinity selection; amplification microchambers; bead-based polymerase chain reaction; cell culturing; cell membrane protein-binding strands; cell-binding ssDNA; cell-targeting aptamer isolation; microfluidic device; pressure-driven flow realizes multiround aptamer isolation; randomized single-strand DNA oligomer library; single chip; temperature control chip; DNA; Fluorescence; Libraries; Magnetic separation; Microfluidics; Surface treatment; Temperature control; Amplification; Aptamer; Cell Culture; Cell Targeting; SELEX; Selection;
Conference_Titel :
Micro Electro Mechanical Systems (MEMS), 2014 IEEE 27th International Conference on
Conference_Location :
San Francisco, CA
DOI :
10.1109/MEMSYS.2014.6765620