Title :
Inferring the Function of Genes from Synthetic Lethal Mutations
Author :
Ray, O. ; Bryant, C.H.
Author_Institution :
Dept. of Comput. Sci., Univ. of Bristol, Bristol
Abstract :
Techniques for detecting synthetic lethal mutations in double gene deletion experiments are emerging as powerful tool for analysing genes in parallel or overlapping pathways with a shared function. This paper introduces a logic-based approach that uses synthetic lethal mutations for mapping genes of unknown function to enzymes in a known metabolic network. We show how such mappings can be automatically computed by a logical learning system called extended hybrid abductive inductive learning (XHAIL).
Keywords :
biology computing; formal logic; genetics; learning by example; double gene deletion experiments; extended hybrid abductive inductive learning; logical learning system; metabolic network; synthetic lethal mutations; Biochemistry; Bioinformatics; Biological information theory; Capacitive sensors; Genetic mutations; Genomics; Learning systems; Network synthesis; Organisms; Robots;
Conference_Titel :
Complex, Intelligent and Software Intensive Systems, 2008. CISIS 2008. International Conference on
Conference_Location :
Barcelona
Print_ISBN :
978-0-7695-3109-0
DOI :
10.1109/CISIS.2008.124