DocumentCode :
2689463
Title :
Psim: a simulator for biomolecular dynamics based on P systems
Author :
Bianco, Luca ; Manca, Vincenzo ; Marchetti, Luca ; Petterlini, Michele
Author_Institution :
Univ. of Verona, Verona
fYear :
2007
fDate :
25-28 Sept. 2007
Firstpage :
883
Lastpage :
887
Abstract :
Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics is computed by metabolic algorithms which transform populations of objects according to a mass partition principle, based on suitable generalizations of chemical laws. The basic principles of MP systems are discussed and Psim, a simulation tool we developed in this context to discretely compute systems dynamics, is highlighted in its basic features. A concrete example is reported as well including a real simulation experiment by means of Psim.
Keywords :
Java; biology computing; digital simulation; membranes; molecular biophysics; Java; Psim simulator; biological metabolism; biomolecular dynamics; mass partition principle; metabolic P systems; metabolic algorithm; system dynamics; Analytical models; Biochemistry; Biological system modeling; Biology computing; Biomembranes; Chemicals; Computational modeling; Context modeling; Evolution (biology); Inductors;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Evolutionary Computation, 2007. CEC 2007. IEEE Congress on
Conference_Location :
Singapore
Print_ISBN :
978-1-4244-1339-3
Electronic_ISBN :
978-1-4244-1340-9
Type :
conf
DOI :
10.1109/CEC.2007.4424563
Filename :
4424563
Link To Document :
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