Title :
New support vector machine-based approach over DNA chip data
Author :
Madevska-Bogdanova, Ana ; Ackovska, Nevena
Author_Institution :
Fac. of Natural Sci. & Math., Ss. Cyril & Methodius Univ., Skopje
Abstract :
DNA chip technology is an improved and highly scaled-up version of a 25 year old method to reveal very small changes in several hundreds or even thousands of genes in one step rather than searching one gene at a time. In this paper we used the outcome of this method to recognize the gene functional class cytoplasmic ribosomes, the cell cycle and DNA processing function by their gene expression level, with enforced support vector machines (SVM) by introducing new Kernel, specified for this problem.
Keywords :
bioinformatics; cellular biophysics; genetics; lab-on-a-chip; molecular biophysics; pattern recognition; support vector machines; DNA chip data technology; DNA microarray; DNA processing function; Kernel; gene expression level; gene functional class cytoplasmic ribosome; pattern recognition; support vector machine-based approach; Bioinformatics; DNA; Fungi; Gene expression; Genomics; Pattern recognition; RNA; Sampling methods; Support vector machines; Temperature;
Conference_Titel :
Innovations in Information Technology, 2008. IIT 2008. International Conference on
Conference_Location :
Al Ain
Print_ISBN :
978-1-4244-3396-4
Electronic_ISBN :
978-1-4244-3397-1
DOI :
10.1109/INNOVATIONS.2008.4781752