• DocumentCode
    2719479
  • Title

    Performance and implementation of distributed data CPHF and SCF algorithms

  • Author

    Alexeev, Yuri ; Schmidt, Michael W. ; Windus, Theresa L. ; Gordon, Mark S. ; Kendall, Ricky A.

  • Author_Institution
    Ames Lab., Iowa State Univ., Ames, IA, USA
  • fYear
    2002
  • fDate
    2002
  • Firstpage
    135
  • Lastpage
    142
  • Abstract
    This paper describes a novel distributed data parallel self consistent field (SCF) algorithm and the distributed data coupled perturbed Hartree-Fock (CPHF) step of an analytic Hessian algorithm. The distinguishing features of these algorithms are: (a) columns of density and Fock matrices are distributed among processors, (b) pairwise dynamic load balancing and an efficient static load balancer were developed to achieve a good workload, and (c) network communication time is minimized via careful analysis of data flow in the SCF and CPHF algorithms. By using a shared memory model, novel work load balancers, and improved analytic Hessian steps, we have developed codes that achieve superb performance. The performance of the CPHF code is demonstrated on a large biological system.
  • Keywords
    HF calculations; Hessian matrices; SCF calculations; biology computing; chemistry computing; distributed algorithms; quantum chemistry; resource allocation; shared memory systems; software performance evaluation; workstation clusters; Fock matrices; analytic Hessian algorithm; analytic Hessian steps; distributed data SCF algorithm; distributed data coupled perturbed Hartree-Fock step; efficient static load balancer; large biological system; network communication time; pairwise dynamic load balancing; performance; shared memory model; Algorithm design and analysis; Chemicals; Chemistry; Clustering algorithms; Concurrent computing; Data models; Distributed computing; Games; Postal services; Wave functions;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Cluster Computing, 2002. Proceedings. 2002 IEEE International Conference on
  • Print_ISBN
    0-7695-2066-9
  • Type

    conf

  • DOI
    10.1109/CLUSTR.2002.1137738
  • Filename
    1137738