Title :
Poster: Assessing the content of active endogenous LINE1 retrotransposons in human colorectal cancer samples using high-throughput pyrosequencing
Author :
Fan, Danhua ; Rahrmann, Eric P. ; Silverstein, Kevin A T ; Largaespada, David A.
Author_Institution :
Univ. of Minnesota, Minneapolis, MN, USA
Abstract :
A novel methodology to identify L1 Ta-1 insertion events in human patient tissue samples using high-throughput pyrosequencing was developed. Using this method, many new L1 Ta-1 insertions were identified. One novel L1 Ta-1 insertion was identified in a tumor tissue DNA, but was absent in the adjacent normal tissue DNA. These results suggest that L1 Ta-1 insertions can occur during colon cancer development, where they may contribute mutations conferring a selective advantage to the developing tumor.
Keywords :
DNA; cancer; genetics; medical computing; molecular biophysics; molecular configurations; tumours; L1 Ta-1 insertion events; active endogenous LINE1 retrotransposons; high-throughput pyrosequencing; human colorectal cancer; human patient tissue samples; mutations; tumor tissue DNA; Bioinformatics; Cancer; Colon; DNA; Genomics; Humans; Tumors;
Conference_Titel :
Computational Advances in Bio and Medical Sciences (ICCABS), 2011 IEEE 1st International Conference on
Conference_Location :
Orlando, FL
Print_ISBN :
978-1-61284-851-8
DOI :
10.1109/ICCABS.2011.5729895