Title :
In Search of Microarray Design Decision Support System
Author :
Chen, Yen-Chen ; Lin, Wen-Dar ; Chen, Yun-Ching ; Ho, Jan-Ming
Author_Institution :
Acad. Sinica, Taipei
Abstract :
Expressed sequence tags (ESTs) provides a scope viewer of transcribed gene in organisms in depth. In this work, we establish a web-based system, called Bio301. Bio301 is an integrated system for computational analysis of expressed sequence tags (EST) and microarray design decision support. It provides EST cleaning processes, BLAST similarity analysis, gene ontology (GO) retrieval, GO browsing, statistics and recommend cDNA/EST clone list for microarray design. Furthermore, the Web interface of Bio301 is easy for users to manipulate and manage EST data like a virtual lab on Internet.
Keywords :
Internet; biocomputing; decision support systems; genetic engineering; medical computing; molecular biophysics; BLAST similarity analysis; Bio301; Web-based system; decision support system; expressed sequence tags; gene ontology retrieval; microarray design; Assembly; Bioinformatics; Cleaning; Contamination; Decision support systems; Libraries; Ontologies; Organisms; Sequences; Statistical analysis;
Conference_Titel :
Innovative Computing, Information and Control, 2007. ICICIC '07. Second International Conference on
Conference_Location :
Kumamoto
Print_ISBN :
0-7695-2882-1
DOI :
10.1109/ICICIC.2007.351
