DocumentCode
2766068
Title
Dealing with reusability and reproducibility for scientific workflows
Author
Lifschitz, Sergio ; Gomes, Luciana ; Rehen, Stevens K.
Author_Institution
Dept. de Inf., PUC-Rio, Rio de Janeiro, Brazil
fYear
2011
fDate
12-15 Nov. 2011
Firstpage
625
Lastpage
632
Abstract
Scientific Workflow Management Systems (SWfMS) are being widely used to represent and execute scientific experiments. One particular SWfMS feature that has received much attention by the scientific community is the automatic capture of provenance data. This allows users to track information about which resources and parameters were used to obtain such results, but also other important information to validate and publish an experiment. In the present work, we propose an approach for modeling and storing data that is consumed and produced by workflows executed by SWfMS. This approach has two main objectives: it aims (i) to support the strict reproducibility of an experiment and (ii) to allow the reuse of produced artifacts by keeping information about its origin.
Keywords
bioinformatics; workflow management software; SWfMS; Scientific Workflow Management Systems; automatic provenance data capture; information tracking; reproducibility; reusability; Electronic mail; Proteins; Relational databases; Solid modeling; Three dimensional displays; provenance; reproduce; reuse; workflow;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE International Conference on
Conference_Location
Atlanta, GA
Print_ISBN
978-1-4577-1612-6
Type
conf
DOI
10.1109/BIBMW.2011.6112441
Filename
6112441
Link To Document