DocumentCode :
2791369
Title :
A distributed software package for global sensitivity analysis of biological models
Author :
Quang Tung Thai ; Seokjong Yu ; Yongseong Cho
Author_Institution :
Dept. of Supercomput., Korea Inst. of Sci. & Technol. Inf. (KISTI), Daejeon, South Korea
fYear :
2012
fDate :
11-13 Nov. 2012
Firstpage :
478
Lastpage :
483
Abstract :
Mathematical modeling is a vital tool for studying biological systems. Due to the system complexity and technical challenges in molecular level measurement, it is commonly the case that a large number of model parameters have uncertain values. Analyzing model dynamics from a single estimated parameter set is insufficient and liable for misleading results. Global sensitivity analysis (GSA) has been recommended as a must-have step in the process of developing reliable models. However, the technique comes at high computation costs as it is based on Monte Carlo simulation which requires a large number of model evaluations and manipulating on massive data for sensitivity estimation. In this work, we develop a software package for global sensitivity estimation of biological models. The software is deployed on KISTI high performance computing (HPC) cluster environment to provide web-service to system biology modelers.
Keywords :
Monte Carlo methods; biology computing; mathematical analysis; parallel processing; software packages; GSA; HPC cluster; KISTI high performance computing cluster; Monte Carlo simulation; Web-service; biological models; biological systems; distributed software package; global sensitivity analysis; massive data; mathematical modeling; molecular level measurement; sensitivity estimation; system complexity; technical challenges; Analytical models; Biological system modeling; Computational modeling; Mathematical model; Sensitivity analysis; mathematical modeling; parallel computing; sensitivity analysis; system biology;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics & Bioengineering (BIBE), 2012 IEEE 12th International Conference on
Conference_Location :
Larnaca
Print_ISBN :
978-1-4673-4357-2
Type :
conf
DOI :
10.1109/BIBE.2012.6399724
Filename :
6399724
Link To Document :
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