• DocumentCode
    2791369
  • Title

    A distributed software package for global sensitivity analysis of biological models

  • Author

    Quang Tung Thai ; Seokjong Yu ; Yongseong Cho

  • Author_Institution
    Dept. of Supercomput., Korea Inst. of Sci. & Technol. Inf. (KISTI), Daejeon, South Korea
  • fYear
    2012
  • fDate
    11-13 Nov. 2012
  • Firstpage
    478
  • Lastpage
    483
  • Abstract
    Mathematical modeling is a vital tool for studying biological systems. Due to the system complexity and technical challenges in molecular level measurement, it is commonly the case that a large number of model parameters have uncertain values. Analyzing model dynamics from a single estimated parameter set is insufficient and liable for misleading results. Global sensitivity analysis (GSA) has been recommended as a must-have step in the process of developing reliable models. However, the technique comes at high computation costs as it is based on Monte Carlo simulation which requires a large number of model evaluations and manipulating on massive data for sensitivity estimation. In this work, we develop a software package for global sensitivity estimation of biological models. The software is deployed on KISTI high performance computing (HPC) cluster environment to provide web-service to system biology modelers.
  • Keywords
    Monte Carlo methods; biology computing; mathematical analysis; parallel processing; software packages; GSA; HPC cluster; KISTI high performance computing cluster; Monte Carlo simulation; Web-service; biological models; biological systems; distributed software package; global sensitivity analysis; massive data; mathematical modeling; molecular level measurement; sensitivity estimation; system complexity; technical challenges; Analytical models; Biological system modeling; Computational modeling; Mathematical model; Sensitivity analysis; mathematical modeling; parallel computing; sensitivity analysis; system biology;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics & Bioengineering (BIBE), 2012 IEEE 12th International Conference on
  • Conference_Location
    Larnaca
  • Print_ISBN
    978-1-4673-4357-2
  • Type

    conf

  • DOI
    10.1109/BIBE.2012.6399724
  • Filename
    6399724