DocumentCode
2837101
Title
A Comparison of Biclustering with Clustering Algorithms
Author
Singh, Ashutosh ; Nagrare, Aditya ; Srikanth, Phani ; Kumar, Devinder ; Dwith, Cyn
Author_Institution
Dept. of Electr. & Electron. Eng., NIT Warangal, Warangal, India
fYear
2011
fDate
17-18 July 2011
Firstpage
1
Lastpage
4
Abstract
In the past years, microarray technologies have become a central tool in biological research. The extraction or identification of gene groups with similar expression pattern plays an important role in the analysis of genes. Besides traditional clustering methods, biclustering is also being used to analyze biological datasets due to its ability to group both genes across conditions simultaneously. The paper presents a comparison of advanced with the traditional tools for biological data extraction. This paper compares different clustering and biclustering approaches used to analyze DLBCL (diffuse large B-cell lymphoma) microarray dataset. The algorithms were compared on the grounds of enrichment values with support from runtime analysis. Typical annotations for the analyzed list of genes can be well understood using the BicAT toolbox. The paper explains in detail the intellects affecting the enrichment values, leading to the best technique for the dataset mentioned above.
Keywords
biology computing; cellular biophysics; data mining; genetics; pattern clustering; BicAT toolbox; DLBCL microarray dataset; biclustering approach; biological data extraction; biological datasets; biological research; clustering method; diffuse large B-cell lymphoma; gene expression pattern; gene group identification; Algorithm design and analysis; Clustering algorithms; Clustering methods; Data mining; Gene expression; Matrix converters;
fLanguage
English
Publisher
ieee
Conference_Titel
Circuits, Communications and System (PACCS), 2011 Third Pacific-Asia Conference on
Conference_Location
Wuhan
Print_ISBN
978-1-4577-0855-8
Type
conf
DOI
10.1109/PACCS.2011.5990194
Filename
5990194
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