Title :
A symbolic approach to probabilistic verification of boolean networks
Author :
Kobayashi, Koichi ; Hiraishi, Kunihiko
Author_Institution :
Sch. of Inf. Sci., Japan Adv. Inst. of Sci. & Technol., Nomi, Japan
Abstract :
A Boolean network (BN) is well known as one of the models of biological networks such as gene regulatory networks, and has been extensively studied. In this paper, for a BN, the verification problems such as the reachability problem are discussed. First, a probabilistic model including both synchronous and asynchronous Boolean dynamics is derived. This model can be generalized as a probabilistic BN. Next, a solution method of the verification problems is proposed, based on a model checking technique. Finally, our method is applied to an apoptosis network. The proposed approach provides us an easy and convenient tool for analysis and control of biological networks.
Keywords :
Boolean functions; biology computing; formal verification; probability; asynchronous Boolean dynamics; biological network; gene regulatory network; model checking technique; probabilistic Boolean network; probabilistic model; probabilistic verification; symbolic approach; Analytical models; Biological system modeling; Boolean functions; Computational modeling; Markov processes; Probabilistic logic;
Conference_Titel :
IECON 2011 - 37th Annual Conference on IEEE Industrial Electronics Society
Conference_Location :
Melbourne, VIC
Print_ISBN :
978-1-61284-969-0
DOI :
10.1109/IECON.2011.6119922