Title :
The nonlinear correlation character of gene expression data on Alzheimer´s disease and hierarchy clustering of co-regulated gene
Author :
Chao-Yang Pang ; Shuai-Qing Liu ; Yong Li ; Ben-Qiong Hu
Author_Institution :
Group of Gene Comput., Sichuan Normal Univ., Chengdu, China
Abstract :
Alzheimer´s disease (AD) is the most common form of dementia. Possibly it is caused by some genes associated with co-regulation genes. With the development of DNA microarray technique, the identification of candidate co-regulated genes via computation becomes feasible. Co-regulated genes share similar biological character so that their expression levels are similar possibly. In this paper, the correlation on different variables of the AD expression data downloaded from [1], is analyzed using Principal Component Analysis (PCA), the following three features are observed: 1. Linear correlation is strong and nonlinear is weak. 2. Co-regulation information of genes is mapped into the compactness of clustering. 3. Nonlinear correlation causes the hierarchy of compact clustering. According these features, a hierarchical sorting of expression data is proposed, and its elementary framework is introduced in this paper.
Keywords :
DNA; correlation methods; lab-on-a-chip; medical computing; medical disorders; nonlinear systems; principal component analysis; Alzheimer disease; DNA microarray technique; biological character; co regulated gene; correlation; dementia; gene expression data; hierarchy clustering; linear correlation; nonlinear correlation character; principal component analysis; Alzheimer´s disease; Correlation; Educational institutions; Genetics; Principal component analysis; Vectors; Alzheimer´s disease; DNA Microarray Data; Gene; Principal Component Analysis;
Conference_Titel :
Granular Computing (GrC), 2011 IEEE International Conference on
Conference_Location :
Kaohsiung
Print_ISBN :
978-1-4577-0372-0
DOI :
10.1109/GRC.2011.6122714