Title :
Predictability of protein subcellular locations by pattern recognition techniques
Author :
Jaramillo-Garzón, J.A. ; Perera-Lluna, A. ; Castellanos-Domínguez, C.G.
Author_Institution :
Dept. de Ing. Electr., Electron. y Comput., Univ. Nac. de Colombia Sede Manizales, Manizales, Colombia
fDate :
Aug. 31 2010-Sept. 4 2010
Abstract :
An analysis of the predictability of subcellular locations is performed by using simple pattern recognition techniques in an attempt to capture the real dimensions of the problem at hand. Results show that there are some particular locations that does not need of high complexity classification models to be predicted with high accuracies, and some partial biological explanations are formulated. All the experiments were carried out over a set of Arabidopsis Thaliana proteins and classes were defined according to the plants GO slim.
Keywords :
biology computing; botany; cellular biophysics; molecular biophysics; pattern recognition; proteins; Arabidopsis thaliana proteins; pattern recognition techniques; protein subcellular location predictability; Accuracy; Amino acids; Biomembranes; Correlation; Markov processes; Ontologies; Proteins; Amino Acid Sequence; Arabidopsis Proteins; Databases, Protein; Pattern Recognition, Automated; Protein Transport; Subcellular Fractions;
Conference_Titel :
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE
Conference_Location :
Buenos Aires
Print_ISBN :
978-1-4244-4123-5
DOI :
10.1109/IEMBS.2010.5626772