Title :
Scaling Dalton, A Molecular Electronic Structure Program
Author :
Aguilar, Xavier ; Schliephake, Michael ; Vahtras, Olav ; Gimenez, Judit ; Laure, Erwin
Author_Institution :
PDC-Center for High Performance Comput., KTH R. Inst. of Technol., Stockholm, Sweden
Abstract :
Dalton is a molecular electronic structure program featuring common methods of computational chemistry that are based on pure quantum mechanics (QM) as well as hybrid quantum mechanics/molecular mechanics (QM/MM). It is specialized and has a leading position in calculation of molecular properties with a large world-wide user community (over 2000 licenses issued). In this paper, we present a characterization and performance optimization of Dalton that increases the scalability and parallel efficiency of the application. We also propose a solution that helps to avoid the master/worker design of Dalton to become a performance bottleneck for larger process numbers and increase the parallel efficiency.
Keywords :
chemistry computing; molecular electronic states; physics computing; quantum chemistry; quantum theory; Dalton; QM-MM; computational chemistry; hybrid quantum mechanics-molecular mechanics; molecular electronic structure program; molecular properties; performance optimization; pure quantum mechanics; Chemistry; Image color analysis; Libraries; Measurement; Optimization; Quantum mechanics; Wave functions;
Conference_Titel :
E-Science (e-Science), 2011 IEEE 7th International Conference on
Conference_Location :
Stockholm
Print_ISBN :
978-1-4577-2163-2
DOI :
10.1109/eScience.2011.43