• DocumentCode
    2953357
  • Title

    A model of chromosome longitudinal structure

  • Author

    Cristea, P.D.

  • Author_Institution
    Bio-Med. Eng. Center, Bucharest Univ., Romania
  • fYear
    2004
  • fDate
    23-25 Sept. 2004
  • Firstpage
    145
  • Lastpage
    150
  • Abstract
    Symbolic nucleotide sequences are converted into digital genomic signals by using a complex representation derived from a tetrahedral vector representation of nucleotides. It is shown that, for large scales, the unwrapped phase of such signals is invariant with respect to the inversion of DNA double helix segments, while the cumulated phase is quite conservative for uniformly distributed single nucleotide polymorphisms (SNP). By re-orienting chromosome coding regions, a "hidden" linear variation of the cumulated phase has been revealed, along with the conspicuous almost linear variation of the unwrapped phase. A model of the chromosome longitudinal structure has been inferred on these bases.
  • Keywords
    DNA; cellular biophysics; genetics; medical signal processing; sequences; DNA double helix segments; chromosome coding regions; chromosome longitudinal structure; cumulated phase; digital genomic signals; symbolic nucleotide sequences; tetrahedral vector representation; uniformly distributed single nucleotide polymorphisms; unwrapped phase; Bioinformatics; Biological cells; DNA; Genomics; Large-scale systems; Microorganisms; Proteins; Sequences; Signal processing; Viruses (medical);
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Neural Network Applications in Electrical Engineering, 2004. NEUREL 2004. 2004 7th Seminar on
  • Print_ISBN
    0-7803-8547-0
  • Type

    conf

  • DOI
    10.1109/NEUREL.2004.1416560
  • Filename
    1416560