DocumentCode
2953357
Title
A model of chromosome longitudinal structure
Author
Cristea, P.D.
Author_Institution
Bio-Med. Eng. Center, Bucharest Univ., Romania
fYear
2004
fDate
23-25 Sept. 2004
Firstpage
145
Lastpage
150
Abstract
Symbolic nucleotide sequences are converted into digital genomic signals by using a complex representation derived from a tetrahedral vector representation of nucleotides. It is shown that, for large scales, the unwrapped phase of such signals is invariant with respect to the inversion of DNA double helix segments, while the cumulated phase is quite conservative for uniformly distributed single nucleotide polymorphisms (SNP). By re-orienting chromosome coding regions, a "hidden" linear variation of the cumulated phase has been revealed, along with the conspicuous almost linear variation of the unwrapped phase. A model of the chromosome longitudinal structure has been inferred on these bases.
Keywords
DNA; cellular biophysics; genetics; medical signal processing; sequences; DNA double helix segments; chromosome coding regions; chromosome longitudinal structure; cumulated phase; digital genomic signals; symbolic nucleotide sequences; tetrahedral vector representation; uniformly distributed single nucleotide polymorphisms; unwrapped phase; Bioinformatics; Biological cells; DNA; Genomics; Large-scale systems; Microorganisms; Proteins; Sequences; Signal processing; Viruses (medical);
fLanguage
English
Publisher
ieee
Conference_Titel
Neural Network Applications in Electrical Engineering, 2004. NEUREL 2004. 2004 7th Seminar on
Print_ISBN
0-7803-8547-0
Type
conf
DOI
10.1109/NEUREL.2004.1416560
Filename
1416560
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