DocumentCode
2954127
Title
A Conceptual Data Model Language for the Molecular Biology Domain
Author
Fernandes de Macedo, Jose Antonio ; Porto, Fabio ; Lifschitz, Sergio ; Picouet, Philippe
Author_Institution
Ecole Polytech. Fed. de Lausanne, Lausanne
fYear
2007
fDate
20-22 June 2007
Firstpage
231
Lastpage
236
Abstract
In-silico experiments require molecular biological knowledge to be mapped into a data model. In a previous work, we have elicited a list of requirements to be attended by a conceptual language for the molecular biology domain. In this paper, we present the evolution of this research by introducing a such language that encompasses most of the identified biological domain requirements. The language offers logical constraints expressions that augments the semantics of data and relationships types, as well as monotonic inheritance. Those aspects address the uncertainty and variability of biological knowledge shortening the gap between scientists mental model and traditional conceptual models.
Keywords
biology computing; data models; molecular biophysics; conceptual data model language; data semantics; logical constraints; molecular biology; monotonic inheritance; Biological system modeling; Biological systems; Cognitive science; Computational biology; Data models; Databases; Evolution (biology); Proposals; Uncertainty; Unified modeling language;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer-Based Medical Systems, 2007. CBMS '07. Twentieth IEEE International Symposium on
Conference_Location
Maribor
ISSN
1063-7125
Print_ISBN
0-7695-2905-4
Type
conf
DOI
10.1109/CBMS.2007.3
Filename
4262655
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