• DocumentCode
    2954127
  • Title

    A Conceptual Data Model Language for the Molecular Biology Domain

  • Author

    Fernandes de Macedo, Jose Antonio ; Porto, Fabio ; Lifschitz, Sergio ; Picouet, Philippe

  • Author_Institution
    Ecole Polytech. Fed. de Lausanne, Lausanne
  • fYear
    2007
  • fDate
    20-22 June 2007
  • Firstpage
    231
  • Lastpage
    236
  • Abstract
    In-silico experiments require molecular biological knowledge to be mapped into a data model. In a previous work, we have elicited a list of requirements to be attended by a conceptual language for the molecular biology domain. In this paper, we present the evolution of this research by introducing a such language that encompasses most of the identified biological domain requirements. The language offers logical constraints expressions that augments the semantics of data and relationships types, as well as monotonic inheritance. Those aspects address the uncertainty and variability of biological knowledge shortening the gap between scientists mental model and traditional conceptual models.
  • Keywords
    biology computing; data models; molecular biophysics; conceptual data model language; data semantics; logical constraints; molecular biology; monotonic inheritance; Biological system modeling; Biological systems; Cognitive science; Computational biology; Data models; Databases; Evolution (biology); Proposals; Uncertainty; Unified modeling language;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer-Based Medical Systems, 2007. CBMS '07. Twentieth IEEE International Symposium on
  • Conference_Location
    Maribor
  • ISSN
    1063-7125
  • Print_ISBN
    0-7695-2905-4
  • Type

    conf

  • DOI
    10.1109/CBMS.2007.3
  • Filename
    4262655