Title :
A first step toward chromosome analysis by compression algorithms
Author :
Rivals, E. ; Delahaye, J.-P. ; Dauchet, M. ; Delgrange, O.
Author_Institution :
LIFL, Lille I Univ., Villeneuve d´´Ascq, France
Abstract :
The authors use Kolmogorov complexity and compression algorithms to study DOS-DNA (DOS: defined ordered sequence). This approach gives quantitative and qualitative explanations of the regularities of apparently regular regions. The authors present the problem of the coding of approximate multiple tandem repeats in order to obtain compression. Then the authors describe an algorithm that allows one to find efficiently approximate multiple tandem repeats. Finally, the authors briefly describe some of their results
Keywords :
DNA; biology computing; computational complexity; data compression; molecular biophysics; pattern matching; sequences; DOS-DNA; Kolmogorov complexity; approximate multiple tandem repeats; chromosome analysis; compression algorithms; defined order sequence DNA; Algorithm design and analysis; Bioinformatics; Biological cells; Compression algorithms; DNA; Diseases; Genomics; Humans; Sequences; Systematics;
Conference_Titel :
Intelligence in Neural and Biological Systems, 1995. INBS'95, Proceedings., First International Symposium on
Conference_Location :
Herndon, VA
Print_ISBN :
0-8186-7116-5
DOI :
10.1109/INBS.1995.404256