• DocumentCode
    2997466
  • Title

    An in-silico approach for drug repositioning to tumour anti-migration using an integrated genomic strategy

  • Author

    Mao, Yong ; Cui, Kemi ; Lulu, Wang ; Zhao, Hong ; Nie, Fang ; Brandl, Miriam ; Beck, Dominik ; Gao, Liang ; Wong, Stephen

  • Author_Institution
    Bioeng. & Bioinf. Program, Weill Cornell Med. Coll., Houston, TX, USA
  • fYear
    2011
  • fDate
    7-8 April 2011
  • Firstpage
    88
  • Lastpage
    91
  • Abstract
    Cell migration is a key step for deterioration of many in situ or metastasis malignant tumours. Tumour anti-migration is a promising strategy to treat cancer, but corresponding drugs developed under such a strategy are still in dire poverty, partly due to the lengthly process of drug trials and approval required by the US Food and Drug Administration (FDA). Given there are thousands of FDA approved drugs in the market, we believe that drug repositioning may provide a fast and cost-effective way to identify potential anti-migration drugs. In this paper, an in-silico drug screening method using a genomic strategy is proposed for the goal, in which genomic signature identification combined with support vector machine modelling is adopted to estimate drug efficacy. And a high-throughput, sensitive, 3-dimensional invasion assay by quantitative bioluminescence imaging proved the performance of proposed method on in vitro disease models.
  • Keywords
    biological techniques; bioluminescence; biomedical measurement; cancer; drugs; genetic algorithms; medical computing; support vector machines; tumours; 3D invasion assay; cancer treatment; cell migration; drug efficacy estimation; drug repositioning; in silico approach; in silico drug screening method; in vitro disease models; integrated genomic strategy; metastatic malignant tumour deterioration; quantitative bioluminescence imaging; support vector machine modelling; tumour antimigration; Bioinformatics; Cancer; Diseases; Drugs; In vitro; Support vector machines; Tumors;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Life Science Systems and Applications Workshop (LiSSA), 2011 IEEE/NIH
  • Conference_Location
    Bethesda, MD
  • Print_ISBN
    978-1-4577-0421-5
  • Type

    conf

  • DOI
    10.1109/LISSA.2011.5754163
  • Filename
    5754163