Title :
Folding RNA on the Cray-2
Author_Institution :
Cray Comput. Corp., Colorado Springs, CO, USA
Abstract :
A C implementation of the stem list method for predicting RNA folding is given for the Cray-2 that takes advantage of both vectorization and multitasking. This implementation of exhaustive, depth first searching may have uses in other applications
Keywords :
Cray computers; biology computing; macromolecular configurations; molecular biophysics; parallel processing; pipeline processing; C implementation; Cray-2; RNA folding; depth first searching; multitasking; stem list method; vectorization; Biological system modeling; DNA; Electronic switching systems; Predictive models; Proteins; RNA; Sequences; Shape; Springs; Temperature;
Conference_Titel :
Supercomputing '90., Proceedings of
Conference_Location :
New York, NY
Print_ISBN :
0-8186-2056-0
DOI :
10.1109/SUPERC.1990.130008
