DocumentCode
3018522
Title
Off-Line Scheduling of Divisible Requests on an Heterogeneous Collection of Databanks
Author
Legrand, Arnaud ; Su, Alan ; Vivien, Frédéric
Author_Institution
Lab. ID, IMAG, Grenoble, France
fYear
2005
fDate
04-08 April 2005
Abstract
In this paper, we consider the problem of scheduling comparisons of motifs against biological databanks. We experimentally show that this problem lies in the divisible load framework with negligible communication costs. In this framework, we propose a polynomial-time algorithm to optimally solve the maximum weighted flow offline scheduling problem on unrelated machines. We also show how to optimally solve the maximum weighted flow off-line scheduling problem with preemption on unrelated machines.
Keywords
biology computing; computational complexity; distributed databases; genetics; scheduling; sequences; biological databank; divisible load framework; heterogeneous databank collection; maximum weighted flow offline scheduling problem; polynomial-time algorithm; Bioinformatics; Biological system modeling; Biology computing; Concurrent computing; Databases; Genomics; Polynomials; Processor scheduling; Proteins; Scheduling algorithm;
fLanguage
English
Publisher
ieee
Conference_Titel
Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International
Print_ISBN
0-7695-2312-9
Type
conf
DOI
10.1109/IPDPS.2005.301
Filename
1419954
Link To Document