• DocumentCode
    3018522
  • Title

    Off-Line Scheduling of Divisible Requests on an Heterogeneous Collection of Databanks

  • Author

    Legrand, Arnaud ; Su, Alan ; Vivien, Frédéric

  • Author_Institution
    Lab. ID, IMAG, Grenoble, France
  • fYear
    2005
  • fDate
    04-08 April 2005
  • Abstract
    In this paper, we consider the problem of scheduling comparisons of motifs against biological databanks. We experimentally show that this problem lies in the divisible load framework with negligible communication costs. In this framework, we propose a polynomial-time algorithm to optimally solve the maximum weighted flow offline scheduling problem on unrelated machines. We also show how to optimally solve the maximum weighted flow off-line scheduling problem with preemption on unrelated machines.
  • Keywords
    biology computing; computational complexity; distributed databases; genetics; scheduling; sequences; biological databank; divisible load framework; heterogeneous databank collection; maximum weighted flow offline scheduling problem; polynomial-time algorithm; Bioinformatics; Biological system modeling; Biology computing; Concurrent computing; Databases; Genomics; Polynomials; Processor scheduling; Proteins; Scheduling algorithm;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International
  • Print_ISBN
    0-7695-2312-9
  • Type

    conf

  • DOI
    10.1109/IPDPS.2005.301
  • Filename
    1419954