DocumentCode
3034361
Title
Simulation of oscillatory dynamics of blood testosterone levels using the crossover method
Author
Sabnis, Amit ; Harrison, Robert W.
Author_Institution
Dept. of Biol., Georgia State Univ., Atlanta, GA, USA
fYear
2010
fDate
2-5 May 2010
Firstpage
1
Lastpage
6
Abstract
Blood testosterone levels oscillate periodically in humans. The in vivo dynamics of this biochemical system cannot be simulated in silico using a continuous deterministic solution of a previously reported mathematical model. The use of the stochastic simulation algorithm (SSA), however, has been reported to generate sustained oscillations that are qualitatively and quantitatively consistent with the experimental observations. Although the SSA is capable of accurately simulating a biochemical network, it is extremely inefficient from a computational standpoint. In this work, we have attempted to simulate the above mentioned model using a deterministic-stochastic crossover method, for three separate sets of parameters. Each time, not only did the results show the existence of sustained oscillations but also that the computational time was at least four times lower than the corresponding SSA solution. The crossover method can hence be proposed as a viable alternative to the SSA for simulating biochemical systems that are commonly encountered in systems biology applications.
Keywords
biology computing; blood; mathematical analysis; stochastic processes; SSA; biochemical network; biochemical system; biology applications; blood testosterone levels; computational standpoint; crossover method; mathematical model; oscillatory dynamic simulation; stochastic simulation algorithm; Biological system modeling; Biology computing; Blood; Computational modeling; Computer networks; Humans; In vivo; Mathematical model; Stochastic processes; Testing;
fLanguage
English
Publisher
ieee
Conference_Titel
Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2010 IEEE Symposium on
Conference_Location
Montreal, QC
Print_ISBN
978-1-4244-6766-2
Type
conf
DOI
10.1109/CIBCB.2010.5510490
Filename
5510490
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