Title :
CADViST: Visualization Tool for BLAST Alignment of Dengue Virus Sequences
Author :
Viriyasaksathian, Boonyarat ; Wongsawat, Yodchanan ; Suriyaphol, Prapat
Author_Institution :
Dept. of Biomed. Eng., Mahidol Univ., Nakornpathom, Thailand
Abstract :
Exploration of the search engine that can simultaneously visualize the genomic sequences is one of the challenging problems. In this paper, we propose the software, called CADViST. The UnitX graphical representation (previously proposed by the authors) is employed as the alternative tool to visualize the result obtained from the Basic Local Alignment Search Tool (BLAST). The proposed software can efficiently help the users/experts to easily interpret the results, especially in Dengue virus sequence analysis where different serotypes or subtypes need to be distinguished.
Keywords :
bioinformatics; data visualisation; genomics; microorganisms; molecular biophysics; search engines; software tools; BLAST; CADViST; UnitX graphical representation; basic local alignment search tool; bioinformatics; dengue virus sequence; genomic sequence; visualization tool; Bioinformatics; Biomedical engineering; DNA; Data visualization; Discrete Fourier transforms; Displays; Fourier transforms; Genomics; Sequences; Spectrogram;
Conference_Titel :
Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-4712-1
Electronic_ISBN :
2151-7614
DOI :
10.1109/ICBBE.2010.5515779