• DocumentCode
    3108098
  • Title

    A Svm-Based Algorithm for Automatic Species Classification of a Marine Diatom Genus Coscinodiscus Ehrenberg

  • Author

    Luo Jinfei ; Luo Qiaoqi ; Gao Yahui ; Chen Changping ; Liang Junrong ; Yang Chenhui

  • Author_Institution
    Sch. of Life Sci., Xiamen Univ., Xiamen, China
  • fYear
    2010
  • fDate
    18-20 June 2010
  • Firstpage
    1
  • Lastpage
    6
  • Abstract
    Coscinodiscus Ehrenberg is a large and ecologically important diatom genus with plentiful species in marine phytoplankton and with a variety of round shapes and ornamentation. These properties can be measured by computer image pre-segmentation and feature extraction with threshold methods. However, it proves to be complicated task because of the high spatial variability of ornamentation properties. Researchers have shown a Teach-program and a number of library functions operating on sample image lists (SIL´s) and operating on classifiers (CF´s) to solve the problem. In this paper, we present Coscinodiscus Ehrenberg ornamentation classifier algorithm called support vector machines (SVMs) to derive a new set of SIL´s and CF´s. The principal purpose of SVMs is Coscinodiscus Ehrenberg images pattern recognition approach. A pattern is in this context always the SIL´s contained in a sub-rectangle of some given (possibly larger) image. For the same classifier this sub-rectangle must always have the same dimensions, while the query image to be searched may be arbitrarily large. The training is done by preparing SIL´s for the pattern taxa in question and feeding them to CF´s created. Our classifier generation with preprocessing code optimization achieves a AAAAA preprocessing code, a 0.981 learning success, a 100% computational complexity. Train with SIL´s achieves 212 samples, 17 taxa, a 0.472% error rate and Test with Query image searching achieves 253 samples, 17 taxa, a 15.81% error rate. The experiments demonstrate that the proposed method is very robust to the threshold segmentation and ornamentation feature extraction of Coscinodiscus Ehrenberg images, and is effective and useful for species classification of Coscinodiscus Ehrenberg.
  • Keywords
    biology computing; feature extraction; image classification; image segmentation; microorganisms; support vector machines; AAAAA preprocessing code; Coscinodiscus Ehrenberg; SVM-based algorithm; Teach-program; Test with Query image searching; automatic species classification; classifier generation; computer image presegmentation; feature extraction; marine diatom genus; marine phytoplankton; ornamentation classifier algorithm; ornamentation properties; pattern recognition approach; preprocessing code optimization; sample image lists; support vector machines; Computational complexity; Error analysis; Feature extraction; Libraries; Pattern recognition; Robustness; Shape; Support vector machine classification; Support vector machines; Testing;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
  • Conference_Location
    Chengdu
  • ISSN
    2151-7614
  • Print_ISBN
    978-1-4244-4712-1
  • Electronic_ISBN
    2151-7614
  • Type

    conf

  • DOI
    10.1109/ICBBE.2010.5515840
  • Filename
    5515840