Title :
JProNet: Systematic Network Analysis of Topological Properties of Protein 3D Structures
Author :
Gao, Jun ; Li, Zhijun
Author_Institution :
Inst. of Theor. Chem., Shandong Univ., Jinan, China
Abstract :
JProNet is a Java-based network tool for systematic analysis of structure-based topological properties of proteins. It incorporates new developments in network theory such as the scale-free and the small-world properties. JProNet can generate rich information of the residue packing topology of protein structure networks. JProNet is a platform independent, interactive and user-friendly tool. Users are empowered with the flexibility to input their customized protein structure-based network and define the weight of the edges in the network prior to the analysis.
Keywords :
biology computing; interactive devices; molecular biophysics; molecular configurations; proteins; JProNet; Java-based network tool; interactive tool; platform independent tool; protein 3D structures; residue packing topology; scale-free property; small-world property; systematic network analysis; topological properties; user-friendly tool; Biochemical analysis; Bioinformatics; Chemistry; Computer interfaces; Computer networks; Graphics; Java; Laboratories; Network theory (graphs); Protein engineering;
Conference_Titel :
Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-4712-1
Electronic_ISBN :
2151-7614
DOI :
10.1109/ICBBE.2010.5516278
