JProNet: Systematic Network Analysis of Topological Properties of Protein 3D Structures

Author

Gao, Jun ; Li, Zhijun

Author_Institution

Inst. of Theor. Chem., Shandong Univ., Jinan, China

fYear

2010

fDate

18-20 June 2010

Firstpage

1

Lastpage

3

Abstract

JProNet is a Java-based network tool for systematic analysis of structure-based topological properties of proteins. It incorporates new developments in network theory such as the scale-free and the small-world properties. JProNet can generate rich information of the residue packing topology of protein structure networks. JProNet is a platform independent, interactive and user-friendly tool. Users are empowered with the flexibility to input their customized protein structure-based network and define the weight of the edges in the network prior to the analysis.

Keywords

biology computing; interactive devices; molecular biophysics; molecular configurations; proteins; JProNet; Java-based network tool; interactive tool; platform independent tool; protein 3D structures; residue packing topology; scale-free property; small-world property; systematic network analysis; topological properties; user-friendly tool; Biochemical analysis; Bioinformatics; Chemistry; Computer interfaces; Computer networks; Graphics; Java; Laboratories; Network theory (graphs); Protein engineering;

fLanguage

English

Publisher

ieee

Conference_Titel

Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on

Conference_Location

Chengdu

ISSN

2151-7614

Print_ISBN

978-1-4244-4712-1

Electronic_ISBN

2151-7614

Type

conf

DOI

10.1109/ICBBE.2010.5516278

Filename

5516278