• DocumentCode
    3122374
  • Title

    Determination of Genomic Sequence of Lily Symptomless Virus

  • Author

    Chai, Weiguo ; Wang, Chong ; Han, Lijuan ; Chen, Shaoning ; Zhang, Yuchuang ; Chen, Jishuang

  • Author_Institution
    Inst. of Bioeng., Zhejiang Sci-Tech Univ., Hangzhou, China
  • fYear
    2010
  • fDate
    18-20 June 2010
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    cDNA containing the 3´ part sequences of seven Lily symptomless virus (LSV) isolates were obtained by RT-PCR and sequenced. The sequenced region is corresponding to partial CP gene and the entire sequences of 16kDa gene located at the 3´ end of LSV genome. The sequence homologies of partial CP and 16 kDa protein genes, compared with other reported isolates, were 87.4% to 100% and 97.9% to 100% respectively. At the amino acid level, they shared 95.9% to 100% and 95.7% to 100% sequence similarity respectively. A RNA slide hybridization assay was used to detect the natural occurrence of LSV in lily plants, from both imported cultivars and wild plants. The occurrence frequency of LSV was 40.0% in lily samples provided by Beijing Enter& Exit Inspection and Quarantine Bureau; and it was 56% and 60% in the samples from Lishui and Haining, Zhejiang Province respectively; the frequency of LSV was 40.0% in the samples of lily varieties from Kunming, Yunnan Province and Guangzhu, Guangdong Province respectively. Thus, LSV infection occurs at a relatively high frequency in field lily from China.
  • Keywords
    DNA; biochemistry; biological techniques; botany; cellular biophysics; genetics; genomics; microorganisms; proteomics; 16kDa protein gene; LSV genome; Lily symptomless virus; RNA slide hybridization assay; RT-PCR; cDNA; cultivars; genomic sequence; lily plants; sequence homologies; wild plants; Bioinformatics; Biological materials; Biotechnology; Frequency; Genomics; Inspection; Proteins; RNA; Tail; Viruses (medical);
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
  • Conference_Location
    Chengdu
  • ISSN
    2151-7614
  • Print_ISBN
    978-1-4244-4712-1
  • Electronic_ISBN
    2151-7614
  • Type

    conf

  • DOI
    10.1109/ICBBE.2010.5516503
  • Filename
    5516503