• DocumentCode
    3131295
  • Title

    The Construction of Metagenome of Metal-Contaminated River Sediments and Screening Heavy-Metal Resistant Gene

  • Author

    Wang, Lei ; Qi, Pei Shi ; Xin, Ming

  • Author_Institution
    State Key Lab. of Urban Water Resources & Environ., Harbin Inst. of Technol., Harbin, China
  • fYear
    2010
  • fDate
    18-20 June 2010
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    Metagenome is a fast developing cultivation independent technology, which is useful in addressing evolutionary and ecological relationship of microbial communities, also quite challenging to research function genes. Here we improved DNA extraction method and the DNA extracted is of high yield and allows direct 16S rDNA PCR amplification. we used the high-molecular-weight bacterial DNA to construct sediment metagenomic library. The metagenomic library of river sediments polluted was constructed, and then was estimated by digested clones selected randomly by BamH I. The metagenomic library containing 6,000 clones was constructed into pUC18 vector. An positive clones was selected by functional screening of the library. A Zn-Cd resistance active gene designated Mtx was identified by subcloning, sequencing and expression. This Mtx gene encodes cation-proton-antiporter belonging to Czc family, which is most related to the Czc R gene from Ralstonia sp. CH34 with 93% similarity.
  • Keywords
    DNA; contamination; ecology; genomics; microorganisms; river pollution; sediments; soil pollution; 16S rDNA PCR amplification; Czc family; DNA extraction method; Mtx; Ralstonia sp; Zn-Cd resistance active gene; bacterial DNA; cultivation independent technology; digested clones; ecological relationship; evolutionary relationship; metagenome construction; metal-contaminated river sediments; microbial communities; pUC18 vector; river sediment pollution; screening heavy-metal resistant gene; sediment metagenomic library; subcloning; Biochemistry; Cloning; DNA; Immune system; Libraries; Microorganisms; Pollution; Rivers; Sampling methods; Sediments;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
  • Conference_Location
    Chengdu
  • ISSN
    2151-7614
  • Print_ISBN
    978-1-4244-4712-1
  • Electronic_ISBN
    2151-7614
  • Type

    conf

  • DOI
    10.1109/ICBBE.2010.5516937
  • Filename
    5516937