Title :
Biological LC/MS Preprocessing and Analysis with jABC, jETI and xcms
Author :
Kubczak, Christian ; Margaria, Tiziana ; Fritsch, Arno ; Steffen, Bernhard
Author_Institution :
Univ. of Dortmund, Dortmund
Abstract :
LC/MS is a successful analysis technique for the statistical analysis used in several branches of biology. It requires an intense screening and combination of the raw data, which is usually done with programs and libraries invoked by scripts in the domain-specific statistics language S or R. We show here how to model and implement this complex workflow in a service-oriented fashion, using the jABC service definition environment and jETI for remote service integration and execution.
Keywords :
Web services; biology computing; software engineering; statistical analysis; workflow management software; biological LC/MS preprocessing; domain-specific statistics language; jABC service definition environment; jETI; remote service integration; service-oriented fashion; statistical analysis; xcms; Application software; Biological system modeling; Biometrics; Mass spectroscopy; Mice; Performance analysis; Proteins; Proteomics; Software engineering; Statistical analysis;
Conference_Titel :
Leveraging Applications of Formal Methods, Verification and Validation, 2006. ISoLA 2006. Second International Symposium on
Conference_Location :
Paphos
Print_ISBN :
978-0-7695-3071-0
DOI :
10.1109/ISoLA.2006.48
