DocumentCode
3146056
Title
Similarities Of DNA sequences based on 3D chaos game representation
Author
Huang, Hailan ; Shi, Long
Author_Institution
Sch. of Math. & Comput. Sci., Xiangtan Univ., Xiangtan, China
Volume
6
fYear
2010
fDate
16-18 Oct. 2010
Firstpage
2594
Lastpage
2597
Abstract
Based on 3D chaos game representation of DNA sequence, we obtain four characteristic curves. The geometrical centers and mean deviation of four curves have been grouped into a sixteen-component vector to represent the DNA sequence. The Euclidean distances among introduced vectors are applied to characterize and compare the coding sequences of the first exon of beta globin gene of 11 different species.
Keywords
DNA; chaos; 3D chaos game representation; DNA sequences; Euclidean distances; beta globin gene; geometrical centers; mean deviation; Chaos; DNA; Encoding; Games; Humans; Mice; Three dimensional displays; chaos game representation; characteristic curve; geometrical center; mean deviation; similarity;
fLanguage
English
Publisher
ieee
Conference_Titel
Biomedical Engineering and Informatics (BMEI), 2010 3rd International Conference on
Conference_Location
Yantai
Print_ISBN
978-1-4244-6495-1
Type
conf
DOI
10.1109/BMEI.2010.5639720
Filename
5639720
Link To Document