Title :
The Cloning and Analysis of a Partial Lipase Gene Sequence of Staphylococcus hominis GIMT1.079: Partial Lipase Gene Sequencing of S. hominis
Author :
Qiao Na-na ; Gao Qiang ; Zhao Qin ; Wang De-pei ; Chen Yi-peng ; Zhao Wen-yi ; Yu Chang-yan
Author_Institution :
Coll. of Biotechnol., Tianjin Univ. of Sci. & Technol., Tianjin, China
Abstract :
Lipase activity is common in staphylococci. Based on the blast of various known staphylococcal lipase DNA sequences, the degenerate primers were derived to amplify a 782-bp consensus lipase gene sequence of Staphylococcus hominis GIMT1.079, which encoded a deduced polypeptide of 260 amino acid (aa) residues. The alignment of aa sequence revealed that this 260-aa partial lipase of S. hominis shared high homology with those conserved parts of other 11 deduced staphylococcal lipases, in the range of the lowest 43.0% of S. epidermidis and the highest 63.5% of S. saprophyticus. Two aa residues, Ser39 and Asp230, were preliminarily confirmed in the putative catalytic triad as well as the ´P-loop´ motif (-[AG]-x4-G-K-[ST]-) in this deduced 260-aa partial S. hominis lipase sequence.
Keywords :
DNA; biological techniques; enzymes; genetics; microorganisms; molecular biophysics; Asp230; DNA sequences; P-loop motif; Ser39; Staphylococcus hominis GIMT1.079; amino acid residues; amino acid sequence alignment; degenerate primers; lipase activity; partial lipase gene sequence analysis; partial lipase gene sequence cloning; partial lipase gene sequencing; putative catalytic triad; Biochemistry; Bioinformatics; Biotechnology; Cloning; DNA; Fungi; Genomics; Laboratories; Microorganisms; Sequences;
Conference_Titel :
Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-4712-1
Electronic_ISBN :
2151-7614
DOI :
10.1109/ICBBE.2010.5518078