• DocumentCode
    3167118
  • Title

    Determining longest common subsequences of two sequences on a linear array of processors

  • Author

    Mukherjee, Amar

  • Author_Institution
    Dept. of Comput. Sci., Univ. of Central Florida, Orlando, FL, USA
  • fYear
    1992
  • fDate
    4-7 Aug 1992
  • Firstpage
    526
  • Lastpage
    537
  • Abstract
    This paper presents special-purpose linear array processor architecture for determining longest common subsequences (LCS) of two sequences. The algorithm uses systolic and pipelined architectures suitable for VLSI implementation. The algorithms are also suitable for implementation on parallel machines. The author first develops a `greedy´ algorithm to determine some of the LCS and then proposes a generalization to determine all LCS of the given pair of sequences. Earlier hardware algorithms were concerned with determining only the length of LCS or the edit distance of two sequences
  • Keywords
    VLSI; systolic arrays; VLSI implementation; greedy algorithm; linear array of processors; longest common subsequences; pipelined architectures; systolic architecture; Algorithm design and analysis; Biology computing; Computer architecture; Computer science; DNA; Genetics; Hardware; Parallel machines; Sequences; Very large scale integration;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Application Specific Array Processors, 1992. Proceedings of the International Conference on
  • Conference_Location
    Berkeley, CA
  • ISSN
    1063-6862
  • Print_ISBN
    0-8186-2967-3
  • Type

    conf

  • DOI
    10.1109/ASAP.1992.218547
  • Filename
    218547