DocumentCode
3167118
Title
Determining longest common subsequences of two sequences on a linear array of processors
Author
Mukherjee, Amar
Author_Institution
Dept. of Comput. Sci., Univ. of Central Florida, Orlando, FL, USA
fYear
1992
fDate
4-7 Aug 1992
Firstpage
526
Lastpage
537
Abstract
This paper presents special-purpose linear array processor architecture for determining longest common subsequences (LCS) of two sequences. The algorithm uses systolic and pipelined architectures suitable for VLSI implementation. The algorithms are also suitable for implementation on parallel machines. The author first develops a `greedy´ algorithm to determine some of the LCS and then proposes a generalization to determine all LCS of the given pair of sequences. Earlier hardware algorithms were concerned with determining only the length of LCS or the edit distance of two sequences
Keywords
VLSI; systolic arrays; VLSI implementation; greedy algorithm; linear array of processors; longest common subsequences; pipelined architectures; systolic architecture; Algorithm design and analysis; Biology computing; Computer architecture; Computer science; DNA; Genetics; Hardware; Parallel machines; Sequences; Very large scale integration;
fLanguage
English
Publisher
ieee
Conference_Titel
Application Specific Array Processors, 1992. Proceedings of the International Conference on
Conference_Location
Berkeley, CA
ISSN
1063-6862
Print_ISBN
0-8186-2967-3
Type
conf
DOI
10.1109/ASAP.1992.218547
Filename
218547
Link To Document